Tools: Google Colab
Presenting Google Colab I will introduce you to Colab from Google Drive: the basics, a few useful links, useful tips and procedures. Summary Brief overview …
Notes
Compilation of academic notes: tutorials, summaries, pipelines, etc.
THE ABC OF SERVERS AND CLUSTERS
THE ABC OF SERVERS AND CLUSTERS If you work in bioinformatics, you may have to process large datasets with complex scripts. Probably, your computer does …
TAXONOMY PROFILING
Taxonomy profiling of microbiome samples. A shotgun emphasis Here, I will show the importance of the taxonomy profiling. Besides I provide a scope of …
COMMUNITIES: DIVERSITY INDICES
DIVERSITY INDICES FOR COMMUNITIES Here, I will show the importance of the abundance, richness, evenness, and diversity concepts. Besides I explain in raw terms, …
The first decision: amplicon sequencing or wgs? Or… both? :O
Return to main post The first decision: amplicon sequencing or wgs? Or… both? :O The microbiome pipelines can be divided in two categories, whole genome …
I choose to work with a shotgun approach; Now, what? :|
Return to main post I choose to work with a shotgun approach; Now, what? 😐 Fig. 3. Overview of a shotgun pipeline. After some quality …
Importance of taxonomy profiles
Return to main post The two main questions in most microbiome projects are What “little bugs” are in the sample? What is the metabolic potential …